Ok heres the answer:
1) I did test the coils one of them isnt working - the melted one.
2) when the bike is running and gets to temperature - the engine stops and the electrics cut off - lights go off / instruments go off / fuel pump goes off. Nothing. The electrics wont come on again and start the engine until its cooled down. Then the circle of life begins again.
3) I have released the cable ties around the head stock and checked for breakages and no shorts or breakages found on wires to the ignition.
Check your main earth connection on the gearbox casing. The connection naturally cycles through temperature changes.