I met a guy down in the W.Tyrol, with an R1. Full race system, a tiny 'show' plate & tail tidy. He got pulled in Germany, in an Umwelt zone, where stop checks often crop up in my experience. Apparently the Polizei spotted both issues but seemed more interested in the fact that cameras would not be able to read his dodgy plate & hence the authorities would be unable to send on any speeding violations. He managed to talk his way out, without a fine or confiscation - I think they took pity on his discomfort, riding that bloody noisy thing for a few thousand miles.
However Switzerland is an entirely different ball game. Cross the line of legality there & little/no sympathy will be shown. Your bike, your trip, your decision - just don't come bleating on here if you get nicked please.